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Kokwaro JO. "An overview of the current status of biodiversity in Africa." AAS Whydah newsletter , January 27, 1994:9.
Kokwaro JO. "Two new species of Meliola (Ascomyceetes) form Kenya." Fungal Diversity . 1999;2(153-157).
Kokwaro JO. Vegetation map of Mount Kenya. Nairobi, Kenya: Survey of Kenya; 1988.
Kokwaro JO. "Euphorbiaceae.". 1976.Website
Kokwaro JO. Classification of East African Crops. Nairobi: University of Nairobi Press; 2013.University of Nairobi Press
Kokwaro JO, et al. "Alpine plant communities of Mount Elgon, An altitudinal transect along the Koitoboss Route." Journal of the East Africa Natural History Society. 1988;75 (190):12.
Kokwaro JO. "Maintaining the balance between Agriculture and the environment.". In: Fifth International Farm Management Congress. Nairobi; 1983.
Kokwaro JO. "New Taxa and combination in Rutaceae of East Africa and North-East Africa." Kew Bulletin . 1978;34(4):785-798.
Kokwaro JO. Aquatic resources of Kenya. Mombasa, Kenya; 1981.
Kokwaro JO. "Meliola icacinacearum and M. Kerichoensis as new Meliolaceae from Kenya." Mycological Research Journal. 1998;102(2):1418-1420.
Kokwaro JO. "Seasonal traditional fruits and vegetables of Kenya." Mitt. Inst. Allg. Bot. 1990;23:911-928.
Kokwaro JO. Medicinal Plants of East Africa. Nairobi: University of Nairobi Press; 2009.University of Nairobi Press
Kokwaro JO. "Traditional methods of treating skin diseases in Kenya through the use of plants." Monogr. Syst. Bot. Missouri Bot. Gard. 1988;25:363-372.
Kokwaro JO, Herlocker DJ. A check-list of Botanical, Samburu and Rendile names of plants of the IPAL (UNESCO) study area, Marsabit District, Kenya,. Nairobi, Kenya: IPAL (UNESCO) Technical Paper No. D-4; 1982.
Kokwaro JO. The Kakamega forest of Kenya. Nairobi: ETMA; 1984.
Kokwaro JO. "Vegetation.". In: Ecological survey of the Kamburu/ Gitaru hydroelectric dam area of Kenya. Stockholm: Ecological Bulletin No.29; 1979.
Kokwaro JO. "Conservation of Medicinal Plants in Kenya.". In: Conservation of Medicinal Plants. London: Cambridge; 1991.
Kokwaro JO. "Vegetation analysis of the upper Teleki Valley of Mt. Kenya and adjacent areas." Journal of East African Natural History Society. 1981;171:1-8.
Kokwaro JO. "Ethnobotany in Africa .". In: Ethnobotany by R.E. Schultes & S. Von Reis, . Portland, Oregon: Dioscorides Press; 1995.
Kokwaro JO, Aketch CA. "A comparative study of the Kenya Acacia species based on their pollen morphological characters." Mitt. Inst. Allg. Bot.. 1990;23b:665-676.
Kokwaro JO. "Valerianaceae." Flora of Ethiopia and Eritrea.. 2001;4(1):285.
Kokwaro JO. "Conservation status of the Kakamega forest in Kenya." Monogr. Sys. Bot. Missouri Bot. Gard.. 1988;25:471-489.
Kokwaro JO, Johns T. Luo-English Biological Dictionary. Nairobi: East African Educational Publishers Ltd; 2013.
Kokwaro JO. "The animal threat to Mount Kenya’s Afroapline plants." Swara . 1987;10(1):30-31.
Kokwaro JO. "The state of conservation in African Tropical Forest.". In: UNEP/ADB workshop on the environment of indigenous African timber trees. Abidjan; 1983.
Kokwaro JO. Research on medicinal and aromatic plants of East Africa. Citta di Castello ; 1983.
Kokwaro JO, Gillett JB. "Notes on Anacardiaceae of Eastern Africa." Kew Bulletin. 1980;34(4):745-760.

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